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tmtsixplex isobaric mass tagging kit  (Thermo Fisher)


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    Thermo Fisher tmtsixplex isobaric mass tagging kit
    Tmtsixplex Isobaric Mass Tagging Kit, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/tmtsixplex+isobaric+mass+tagging+kit/tmt+reagent/pm40570373-302-65-70
    Average 90 stars, based on 1 article reviews
    tmtsixplex isobaric mass tagging kit - by Bioz Stars, 2026-09
    90/100 stars

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    Isolation:

    Article Title: Modified activities of macrophages’ deubiquitinating enzymes after Francisella infection
    Article Snippet: .. Following the manufacturer’s protocol, 100 μg of proteins isolated from cell lysates were prepared for TMT labeling using the TMTsixplex Isobaric Mass Tagging kit (Thermo Fisher, 90064). .. Proteins were digested overnight at 37°C with trypsin (SOLu-trypsin dimethylated; Sigma-Aldrich, EMS0005) in the ratio trypsin:proteins = 1:30 (w/w).

    Multiplex sample analysis:

    Article Title: Modified activities of macrophages’ deubiquitinating enzymes after Francisella infection
    Article Snippet: .. Following the manufacturer’s protocol, 100 μg of proteins isolated from cell lysates were prepared for TMT labeling using the TMTsixplex Isobaric Mass Tagging kit (Thermo Fisher, 90064). .. Proteins were digested overnight at 37°C with trypsin (SOLu-trypsin dimethylated; Sigma-Aldrich, EMS0005) in the ratio trypsin:proteins = 1:30 (w/w).

    Article Title: Identifying the target, mechanism, and agonist of α-ketoglutaric acid in delaying mesenchymal stem cell senescence.
    Article Snippet: .. The collected supernatant was divided into two aliquots: one was subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) using a 12% gel system to separate proteins based on their molecular weight, followed by Coomassie brilliant blue (Beyotime, P0017) staining to visualize and quantify protein band intensities; the other aliquot was processed for TMT-based quantitative proteomics, involving protein reduction, alkylation, and digestion prior to labeling with TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) according to the manufacturer’s protocol. .. The labeled peptides were then fractionated by basic pH reversedphase chromatography and analyzed using an Orbitrap Fusion Lumos mass spectrometer (Thermo Scientific) with MaxQuant software for relative quantitation.

    Labeling:

    Article Title: Modified activities of macrophages’ deubiquitinating enzymes after Francisella infection
    Article Snippet: .. Following the manufacturer’s protocol, 100 μg of proteins isolated from cell lysates were prepared for TMT labeling using the TMTsixplex Isobaric Mass Tagging kit (Thermo Fisher, 90064). .. Proteins were digested overnight at 37°C with trypsin (SOLu-trypsin dimethylated; Sigma-Aldrich, EMS0005) in the ratio trypsin:proteins = 1:30 (w/w).

    Article Title: Regulating PCCA gene expression by modulation of pseudoexon splicing patterns to rescue enzyme activity in propionic acidemia.
    Article Snippet: RNA affinity pulldown and protein quantification by mass spectrometry Two sets of 30-end biotinylated RNA oligonucleotides (LGC Biosearch Technologies) (Table S3) covering the same region of the PCCA pseudoexon were used to perform affinity purification of RNA-binding proteins as previously described.35 A total of 1,000 pmol of each 30 end biotin-coupled RNA oligonucleotide were immobilized in 50 mL streptavidin-coupled magnetic beads (Dynabeads M-280 Streptavidin; Invitrogen) and incubated with HeLa nuclear extract (CILBiotech, Mons, Belgium). .. TandemMass Tag 6-plex labeling of eluted RNA-binding proteins was performed using the TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) and analysis by liquid chromatography-tandem mass spectrometry (LC-MS/ MS) was performed as previously described.80 Or proteins were eluted in XT sample buffer (Bio-Rad) and analyzed by western blotting with immunodetection using primary antibodies against hnRNP A1 (1:2,000; R9778; Sigma-Aldrich), hnRNP A2/B1 (1:1,000; sc-53531; Santa Cruz Biotechnology), TDP-43 (1:1,000; 10782-2-AP; Proteintech, Rosemont, IL), and hnRNP K (1:1,000; sc-28380; Santa Cruz Biotechnology). ..

    Article Title: Identifying the target, mechanism, and agonist of α-ketoglutaric acid in delaying mesenchymal stem cell senescence.
    Article Snippet: .. The collected supernatant was divided into two aliquots: one was subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) using a 12% gel system to separate proteins based on their molecular weight, followed by Coomassie brilliant blue (Beyotime, P0017) staining to visualize and quantify protein band intensities; the other aliquot was processed for TMT-based quantitative proteomics, involving protein reduction, alkylation, and digestion prior to labeling with TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) according to the manufacturer’s protocol. .. The labeled peptides were then fractionated by basic pH reversedphase chromatography and analyzed using an Orbitrap Fusion Lumos mass spectrometer (Thermo Scientific) with MaxQuant software for relative quantitation.

    Article Title: Regulating PCCA gene expression by modulation of pseudoexon splicing patterns to rescue enzyme activity in propionic acidemia
    Article Snippet: A total of 1,000 pmol of each 3′ end biotin-coupled RNA oligonucleotide were immobilized in 50 μL streptavidin-coupled magnetic beads (Dynabeads M-280 Streptavidin; Invitrogen) and incubated with HeLa nuclear extract (CILBiotech, Mons, Belgium). .. Tandem Mass Tag 6-plex labeling of eluted RNA-binding proteins was performed using the TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) and analysis by liquid chromatography-tandem mass spectrometry (LC-MS/MS) was performed as previously described. .. Or proteins were eluted in XT sample buffer (Bio-Rad) and analyzed by western blotting with immunodetection using primary antibodies against hnRNP A1 (1:2,000; R9778; Sigma-Aldrich), hnRNP A2/B1 (1:1,000; sc-53531; Santa Cruz Biotechnology), TDP-43 (1:1,000; 10782-2-AP; Proteintech, Rosemont, IL), and hnRNP K (1:1,000; sc-28380; Santa Cruz Biotechnology).

    Chromatography:

    Article Title: Regulating PCCA gene expression by modulation of pseudoexon splicing patterns to rescue enzyme activity in propionic acidemia.
    Article Snippet: RNA affinity pulldown and protein quantification by mass spectrometry Two sets of 30-end biotinylated RNA oligonucleotides (LGC Biosearch Technologies) (Table S3) covering the same region of the PCCA pseudoexon were used to perform affinity purification of RNA-binding proteins as previously described.35 A total of 1,000 pmol of each 30 end biotin-coupled RNA oligonucleotide were immobilized in 50 mL streptavidin-coupled magnetic beads (Dynabeads M-280 Streptavidin; Invitrogen) and incubated with HeLa nuclear extract (CILBiotech, Mons, Belgium). .. TandemMass Tag 6-plex labeling of eluted RNA-binding proteins was performed using the TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) and analysis by liquid chromatography-tandem mass spectrometry (LC-MS/ MS) was performed as previously described.80 Or proteins were eluted in XT sample buffer (Bio-Rad) and analyzed by western blotting with immunodetection using primary antibodies against hnRNP A1 (1:2,000; R9778; Sigma-Aldrich), hnRNP A2/B1 (1:1,000; sc-53531; Santa Cruz Biotechnology), TDP-43 (1:1,000; 10782-2-AP; Proteintech, Rosemont, IL), and hnRNP K (1:1,000; sc-28380; Santa Cruz Biotechnology). ..

    Article Title: Regulating PCCA gene expression by modulation of pseudoexon splicing patterns to rescue enzyme activity in propionic acidemia
    Article Snippet: A total of 1,000 pmol of each 3′ end biotin-coupled RNA oligonucleotide were immobilized in 50 μL streptavidin-coupled magnetic beads (Dynabeads M-280 Streptavidin; Invitrogen) and incubated with HeLa nuclear extract (CILBiotech, Mons, Belgium). .. Tandem Mass Tag 6-plex labeling of eluted RNA-binding proteins was performed using the TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) and analysis by liquid chromatography-tandem mass spectrometry (LC-MS/MS) was performed as previously described. .. Or proteins were eluted in XT sample buffer (Bio-Rad) and analyzed by western blotting with immunodetection using primary antibodies against hnRNP A1 (1:2,000; R9778; Sigma-Aldrich), hnRNP A2/B1 (1:1,000; sc-53531; Santa Cruz Biotechnology), TDP-43 (1:1,000; 10782-2-AP; Proteintech, Rosemont, IL), and hnRNP K (1:1,000; sc-28380; Santa Cruz Biotechnology).

    Mass Spectrometry:

    Article Title: Regulating PCCA gene expression by modulation of pseudoexon splicing patterns to rescue enzyme activity in propionic acidemia.
    Article Snippet: RNA affinity pulldown and protein quantification by mass spectrometry Two sets of 30-end biotinylated RNA oligonucleotides (LGC Biosearch Technologies) (Table S3) covering the same region of the PCCA pseudoexon were used to perform affinity purification of RNA-binding proteins as previously described.35 A total of 1,000 pmol of each 30 end biotin-coupled RNA oligonucleotide were immobilized in 50 mL streptavidin-coupled magnetic beads (Dynabeads M-280 Streptavidin; Invitrogen) and incubated with HeLa nuclear extract (CILBiotech, Mons, Belgium). .. TandemMass Tag 6-plex labeling of eluted RNA-binding proteins was performed using the TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) and analysis by liquid chromatography-tandem mass spectrometry (LC-MS/ MS) was performed as previously described.80 Or proteins were eluted in XT sample buffer (Bio-Rad) and analyzed by western blotting with immunodetection using primary antibodies against hnRNP A1 (1:2,000; R9778; Sigma-Aldrich), hnRNP A2/B1 (1:1,000; sc-53531; Santa Cruz Biotechnology), TDP-43 (1:1,000; 10782-2-AP; Proteintech, Rosemont, IL), and hnRNP K (1:1,000; sc-28380; Santa Cruz Biotechnology). ..

    Article Title: Regulating PCCA gene expression by modulation of pseudoexon splicing patterns to rescue enzyme activity in propionic acidemia
    Article Snippet: A total of 1,000 pmol of each 3′ end biotin-coupled RNA oligonucleotide were immobilized in 50 μL streptavidin-coupled magnetic beads (Dynabeads M-280 Streptavidin; Invitrogen) and incubated with HeLa nuclear extract (CILBiotech, Mons, Belgium). .. Tandem Mass Tag 6-plex labeling of eluted RNA-binding proteins was performed using the TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) and analysis by liquid chromatography-tandem mass spectrometry (LC-MS/MS) was performed as previously described. .. Or proteins were eluted in XT sample buffer (Bio-Rad) and analyzed by western blotting with immunodetection using primary antibodies against hnRNP A1 (1:2,000; R9778; Sigma-Aldrich), hnRNP A2/B1 (1:1,000; sc-53531; Santa Cruz Biotechnology), TDP-43 (1:1,000; 10782-2-AP; Proteintech, Rosemont, IL), and hnRNP K (1:1,000; sc-28380; Santa Cruz Biotechnology).

    Western Blot:

    Article Title: Regulating PCCA gene expression by modulation of pseudoexon splicing patterns to rescue enzyme activity in propionic acidemia.
    Article Snippet: RNA affinity pulldown and protein quantification by mass spectrometry Two sets of 30-end biotinylated RNA oligonucleotides (LGC Biosearch Technologies) (Table S3) covering the same region of the PCCA pseudoexon were used to perform affinity purification of RNA-binding proteins as previously described.35 A total of 1,000 pmol of each 30 end biotin-coupled RNA oligonucleotide were immobilized in 50 mL streptavidin-coupled magnetic beads (Dynabeads M-280 Streptavidin; Invitrogen) and incubated with HeLa nuclear extract (CILBiotech, Mons, Belgium). .. TandemMass Tag 6-plex labeling of eluted RNA-binding proteins was performed using the TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) and analysis by liquid chromatography-tandem mass spectrometry (LC-MS/ MS) was performed as previously described.80 Or proteins were eluted in XT sample buffer (Bio-Rad) and analyzed by western blotting with immunodetection using primary antibodies against hnRNP A1 (1:2,000; R9778; Sigma-Aldrich), hnRNP A2/B1 (1:1,000; sc-53531; Santa Cruz Biotechnology), TDP-43 (1:1,000; 10782-2-AP; Proteintech, Rosemont, IL), and hnRNP K (1:1,000; sc-28380; Santa Cruz Biotechnology). ..

    Immunodetection:

    Article Title: Regulating PCCA gene expression by modulation of pseudoexon splicing patterns to rescue enzyme activity in propionic acidemia.
    Article Snippet: RNA affinity pulldown and protein quantification by mass spectrometry Two sets of 30-end biotinylated RNA oligonucleotides (LGC Biosearch Technologies) (Table S3) covering the same region of the PCCA pseudoexon were used to perform affinity purification of RNA-binding proteins as previously described.35 A total of 1,000 pmol of each 30 end biotin-coupled RNA oligonucleotide were immobilized in 50 mL streptavidin-coupled magnetic beads (Dynabeads M-280 Streptavidin; Invitrogen) and incubated with HeLa nuclear extract (CILBiotech, Mons, Belgium). .. TandemMass Tag 6-plex labeling of eluted RNA-binding proteins was performed using the TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) and analysis by liquid chromatography-tandem mass spectrometry (LC-MS/ MS) was performed as previously described.80 Or proteins were eluted in XT sample buffer (Bio-Rad) and analyzed by western blotting with immunodetection using primary antibodies against hnRNP A1 (1:2,000; R9778; Sigma-Aldrich), hnRNP A2/B1 (1:1,000; sc-53531; Santa Cruz Biotechnology), TDP-43 (1:1,000; 10782-2-AP; Proteintech, Rosemont, IL), and hnRNP K (1:1,000; sc-28380; Santa Cruz Biotechnology). ..

    Multiplexing:

    Article Title: Overexpression of Igf2-derived Mir483 inhibits Igf1 expression and leads to developmental growth restriction and metabolic dysfunction in mice.
    Article Snippet: .. This analysis was performed using the TMTsixplex Isobaric Mass Tagging Kit (ThermoFisher Scientific – 90064) that allows multiplexing up to six samples. .. Three WT and three 5C embryos at E10.5 were first suspended in RIPA buffer (ThermoFisher Scientific – 89901) and dissociated using Dounce homogenizers.

    Nucleic Acid Electrophoresis:

    Article Title: Identifying the target, mechanism, and agonist of α-ketoglutaric acid in delaying mesenchymal stem cell senescence.
    Article Snippet: .. The collected supernatant was divided into two aliquots: one was subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) using a 12% gel system to separate proteins based on their molecular weight, followed by Coomassie brilliant blue (Beyotime, P0017) staining to visualize and quantify protein band intensities; the other aliquot was processed for TMT-based quantitative proteomics, involving protein reduction, alkylation, and digestion prior to labeling with TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) according to the manufacturer’s protocol. .. The labeled peptides were then fractionated by basic pH reversedphase chromatography and analyzed using an Orbitrap Fusion Lumos mass spectrometer (Thermo Scientific) with MaxQuant software for relative quantitation.

    Molecular Weight:

    Article Title: Identifying the target, mechanism, and agonist of α-ketoglutaric acid in delaying mesenchymal stem cell senescence.
    Article Snippet: .. The collected supernatant was divided into two aliquots: one was subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) using a 12% gel system to separate proteins based on their molecular weight, followed by Coomassie brilliant blue (Beyotime, P0017) staining to visualize and quantify protein band intensities; the other aliquot was processed for TMT-based quantitative proteomics, involving protein reduction, alkylation, and digestion prior to labeling with TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) according to the manufacturer’s protocol. .. The labeled peptides were then fractionated by basic pH reversedphase chromatography and analyzed using an Orbitrap Fusion Lumos mass spectrometer (Thermo Scientific) with MaxQuant software for relative quantitation.

    Staining:

    Article Title: Identifying the target, mechanism, and agonist of α-ketoglutaric acid in delaying mesenchymal stem cell senescence.
    Article Snippet: .. The collected supernatant was divided into two aliquots: one was subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) using a 12% gel system to separate proteins based on their molecular weight, followed by Coomassie brilliant blue (Beyotime, P0017) staining to visualize and quantify protein band intensities; the other aliquot was processed for TMT-based quantitative proteomics, involving protein reduction, alkylation, and digestion prior to labeling with TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) according to the manufacturer’s protocol. .. The labeled peptides were then fractionated by basic pH reversedphase chromatography and analyzed using an Orbitrap Fusion Lumos mass spectrometer (Thermo Scientific) with MaxQuant software for relative quantitation.

    Quantitative Proteomics:

    Article Title: Identifying the target, mechanism, and agonist of α-ketoglutaric acid in delaying mesenchymal stem cell senescence.
    Article Snippet: .. The collected supernatant was divided into two aliquots: one was subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) using a 12% gel system to separate proteins based on their molecular weight, followed by Coomassie brilliant blue (Beyotime, P0017) staining to visualize and quantify protein band intensities; the other aliquot was processed for TMT-based quantitative proteomics, involving protein reduction, alkylation, and digestion prior to labeling with TMTsixplex Isobaric Mass Tagging Kit (Thermo Scientific) according to the manufacturer’s protocol. .. The labeled peptides were then fractionated by basic pH reversedphase chromatography and analyzed using an Orbitrap Fusion Lumos mass spectrometer (Thermo Scientific) with MaxQuant software for relative quantitation.

    Peptide Fractionation:

    Article Title: Characterization of Ksg1 protein kinase-dependent phosphoproteome in the fission yeast S. pombe.
    Article Snippet: ATP analog 3-BrB-PP1 (Toronto Research Chemicals, Toronto, Canada) was dissolved in 100 % DMSO to a final 20 mM concentration, filter-sterilized and stored at − 20 ◦C. .. TMTsixplex Isobaric Mass Tagging kit, Pierce peptide desalting spin columns, Pierce quantitative colorimetric peptide assay, High pH Reversed-phase peptide fractionation kit, High-Select TiO2 phosphopeptide enrichment kit and High-Select Fe-NTA phosphopeptide enrichment kit were purchased from Thermo Fisher (Thermo Fisher, Waltham, MA, USA). .. All other chemicals were of analytical or molecular biology grade and obtained from Sigma (Sigma, St. Louis, MO, USA).

    Phospho-proteomics:

    Article Title: Characterization of Ksg1 protein kinase-dependent phosphoproteome in the fission yeast S. pombe.
    Article Snippet: ATP analog 3-BrB-PP1 (Toronto Research Chemicals, Toronto, Canada) was dissolved in 100 % DMSO to a final 20 mM concentration, filter-sterilized and stored at − 20 ◦C. .. TMTsixplex Isobaric Mass Tagging kit, Pierce peptide desalting spin columns, Pierce quantitative colorimetric peptide assay, High pH Reversed-phase peptide fractionation kit, High-Select TiO2 phosphopeptide enrichment kit and High-Select Fe-NTA phosphopeptide enrichment kit were purchased from Thermo Fisher (Thermo Fisher, Waltham, MA, USA). .. All other chemicals were of analytical or molecular biology grade and obtained from Sigma (Sigma, St. Louis, MO, USA).

    Modification:

    Article Title: Mouse liver sinusoidal endothelial cell responses to the glucocorticoid receptor agonist dexamethasone
    Article Snippet: .. The protein extracts were prepared according to the protocol provided in the TMTsixplex Isobaric Mass Tagging Kit (Thermo Fisher, Cat No 90064) with the following modification: Denaturing reagent was 5% sodium deoxycholate in 100 mM triethylammonium bicarbonate (TEAB). .. Protein concentrations were measured with Direct DetectTM Infrared Spectrometer (Millipore).



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